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Stemloc

Software information
DeveloperIan Holmes (UC Berkeley)|latest_release_version=1|operating_system=UNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
Stable release1|operating_system=UNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
Operating systemUNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
TypeBioinformatics tool|licence=Open source|website=homepage
LicenceOpen source|website=homepage
Websitehomepage

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Stemloc is a program for pairwise RNA structural alignment based on probabilistic models of RNA structure known as Pair stochastic context-free grammars. Stemloc implements constrained versions of the Sankoff algorithms for simultaneous structure prediction and sequence alignment of multiple RNAs.

Stemloc can be downloaded as part of the package. It accepts input files in either FASTA or Stockholm format.




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