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Handel (bioinformatics software package)

Software information
DeveloperIan Holmes (UC Berkeley)|latest_release_version=1|operating_system=UNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
Stable release1|operating_system=UNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
Operating systemUNIX, Linux, Mac, Cygwin on Windows XP|genre=Bioinformatics tool|licence=Open source|website=homepage
TypeBioinformatics tool|licence=Open source|website=homepage
LicenceOpen source|website=homepage
Websitehomepage

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Handel is a suite of programs for multiple sequence alignment.

Since it is based on a model of DNA sequence evolution

that explicitly incorporates insertion and deletion events,

it effectively doubles as a program for ancestral sequence reconstruction.

The theory underpinning Handel is based on the finite state transducer, a concept borrowed from computational linguistics.

Handel can be downloaded as part of the package. It accepts input files in Stockholm format.




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